/trunk Developers: justin

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justin 2010-07-16 15:54 Rev.: 1702

Returing sliceIndex of the files (this is used for checking l/r of anatomy)

18 lines of code changed in 1 file:

• mrUtilities/File/Nifti: getPermutationMatrix.m (+18 -4)

justin 2010-07-16 15:51 Rev.: 1701

Fixing up glm gui a bit for specifying contrasts and some minor bug (like not refreshing the display after computing). This all still needs work.

106 lines of code changed in 3 files:

• mrLoadRet/Analysis/EventRelated: eventRelatedGlm.m (+26 -10), eventRelatedGlmGUI.m (+10 -5), glmContrastPlot.m (+70 -16)

justin 2010-07-16 15:48 Rev.: 1700

Adding a hotCold colormap

17 lines of code changed in 1 file:

• mrLoadRet/Edit: editOverlayGUImrParams.m (+17 -1)

justin 2010-07-16 15:47 Rev.: 1699

Adding code that should calculate l/r flipping. Keeping commented for now.

30 lines of code changed in 1 file:

• mrLoadRet/File: loadAnat.m (+30 -1)

justin 2010-07-12 14:15 Rev.: 1698

Returned field trialNum is now updated according to any dropped trials that happen because a trial starts before or after a scan - i.e. trialNum should be in sync with stimvol

4 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: getStimvol.m (+4 -1)

justin 2010-07-12 13:22 Rev.: 1697

Option to return a d structure and to return the trial numbers for mgl stimvols this is used by getMGLStimvol

9 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: getStimvol.m (+9 -8)

justin 2010-06-21 15:08 Rev.: 1696

Can get help now with either 'help' or '?' as the third argument

2 lines of code changed in 2 files:

• mrLoadRet/View: viewGet.m (+1 -1), viewSet.m (+1 -1)

justin 2010-06-10 12:59 Rev.: 1695

Small fix to make description match the scans that were actually averaged

1 lines of code changed in 1 file:

• mrLoadRet/Analysis/AverageTSeries: averageTSeriesReconcileParams.m (+1 -1)

justin 2010-06-03 11:00 Rev.: 1694

check for empty string

1 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: fixBadChars.m (+1 -1)

justin 2010-06-03 10:59 Rev.: 1693

swaped a line to check for dimensions after dimensions are adjusted to avoid meaningless warning.
Added a header comment to explain how to use outputName argument.

9 lines of code changed in 1 file:

• mrUtilities/File/Varian: fid2nifti.m (+9 -5)

justin 2010-06-03 10:57 Rev.: 1692

When warping display image in dimensions of warped image - this helps for alignment in which you are aligning something that doesn't have the same dimensions.

11 lines of code changed in 1 file:

• mrLoadRet/Plot: mlrDisplayEPI.m (+11 -3)

justin 2010-06-03 10:56 Rev.: 1691

Comment on how warping works

4 lines of code changed in 1 file:

• mrLoadRet/Analysis/ConcatTSeries: concatTSeries.m (+4 -1)

justin 2010-06-03 10:56 Rev.: 1690

Changing step size of arrows when you hold control or command down. If you hold control down while pressing arrows you can jump by 10 if you hold command it jumps by 0.1.
Also, set base coordinate frame is grayed out until you have a destination volume loaded

18 lines of code changed in 2 files:

• mrAlign: mrAlignGUI.fig (changed), mrAlignGUI.m (+18 -10)

justin 2010-05-31 10:39 Rev.: 1689

Check for existence of event related analysis to avoid an error

4 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: eventRelatedPlot.m (+4)

justin 2010-05-28 14:01 Rev.: 1688

Warning message for when ncycles = 0

5 lines of code changed in 1 file:

• mrLoadRet/Analysis/CorAnal: corAnalPlot.m (+5)

justin 2010-05-28 10:09 Rev.: 1687

mlrDisplayEPI fixes bug in which warp was showing 2 images instead of one.
mlrSpikeDetector removes call to arrow function and replaces with line

5 lines of code changed in 2 files:

• mrLoadRet/Plot: mlrDisplayEPI.m (+1 -2), mlrSpikeDetector.m (+4 -4)

justin 2010-05-27 17:42 Rev.: 1686

motionCompBUImrParams needed to have view variable passed in for within and between scans. full motion comp already had v passed in, so no problem. only within and between updated

2 lines of code changed in 2 files:

• mrLoadRet/Analysis/MotionComp: motionCompBetweenScans.m (+1 -1), motionCompWithinScan.m (+1 -1)

justin 2010-04-26 10:19 Rev.: 1685

Fixed minor bug - set group for displaying a group of ROIs didn't work the first time you set it to do a viewSet that did not have a view return argument set.

2 lines of code changed in 2 files:

• mrLoadRet/GUI: mrLoadRetGUI.fig (changed), mrLoadRetGUI.m (+2 -4)

justin 2010-04-24 16:16 Rev.: 1684

display of overlay value as you mouse over points

16 lines of code changed in 1 file:

• mrLoadRet/GUI: mrInterrogator.m (+16 -1)

justin 2010-04-24 16:15 Rev.: 1683

added overlaydataval - ability to get the overlay data value for a particular voxel - used in conjunction with the mrInterrogator it can show the overlay value as you mouse over points

13 lines of code changed in 1 file:

• mrLoadRet/View: viewGet.m (+13)

(1149 more)