/trunk Developers: ds

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ds 2008-08-01 07:47 Rev.: 1219

exlude mexmac files by using better command line options

1 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: mrSearchHelp.m (+1 -1)

ds 2008-08-01 07:29 Rev.: 1218

function that parses all of the mrTools code and looks for occurrences of strings. helpful for finding things while the documentation is growing.

57 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: mrSearchHelp.m (new 57)

ds 2008-08-01 07:28 Rev.: 1217

matlab grep utilities for mrSearchHelp function.

1150 lines of code changed in 2 files:

• mrUtilities/MatlabUtilities: grep.m (new 1145), grep.txt (new 5)

ds 2008-06-25 22:34 Rev.: 1207

compiled mex function for corrDn (matlabPyrTools) for 64 bit linux

79 lines of code changed in 1 file:

• mrUtilities/ImageProcessing: corrDn.mexa64 (new 79)

ds 2008-06-24 18:35 Rev.: 1206

changed int to mwIndex to allow matlab version > R2006b to handle sparse matrix operations properly. when compiling dijkstra.cpp on 64bit linux (and maybe also 64bit mac osx, make sure to use the -largeArraysDims flag to mex

mex -largeArrayDims dijkstra.cpp

70 lines of code changed in 2 files:

• mrUtilities/surfUtils: dijkstra.cpp (+3 -3), dijkstra.mexa64 (+67 -73)

ds 2008-06-18 19:54 Rev.: 1205

mrInit now sets the fields 'originalFileName' to the name of the given nifti file and 'originalGroupName' to 'Raw'. Without those fields present, motionComp choked - fileName and originalFileName are set to the same thing, but this is probably easier than adding logic/check in motionComp.

2 lines of code changed in 1 file:

• mrLoadRet/Init: mrInit.m (+2)

ds 2008-06-18 01:54 Rev.: 1198

adding 64 bit linux binaries of the mex files - they work on compute cluster at the imaging centre at u o nottingham

73 lines of code changed in 5 files:

• mrAlign: regHistogram.mexa64 (new)
• mrUtilities/ImageProcessing: myCinterp3.mexa64 (new)
• mrUtilities/MatlabUtilities: mrDisp.mexa64 (new)
• mrUtilities/surfUtils: assignToNearest.mexa64 (new), dijkstra.mexa64 (new 73)

ds 2008-06-17 01:41 Rev.: 1192

*** empty log message ***

1 lines of code changed in 1 file:

• mrLoadRet/File: loadAnat.m (+1 -5)

ds 2008-06-17 00:41 Rev.: 1191

take into account that anatomy file may have extension .img or .nii. check extension type and return without loading if extension ~= .nii or .img

12 lines of code changed in 1 file:

• mrLoadRet/File: loadAnat.m (+12 -2)

ds 2008-06-12 21:50 Rev.: 1190

add mrReadme option

8 lines of code changed in 1 file:

• mrLoadRet/Init: mrInit.m (+8 -4)

ds 2008-06-12 21:48 Rev.: 1189

createReadme uses default matlab dialog boxes. mrReadme the mrLoadRet equivalents. also timestamp the readme file.

167 lines of code changed in 2 files:

• mrLoadRet/Init: createReadme.m (+5), mrReadme.m (new 162)

ds 2008-06-12 19:51 Rev.: 1188

changed scanDir check to use niftiFileExtension, rather than hardcoded *.img

1 lines of code changed in 1 file:

• mrLoadRet/Init: mrInit.m (+1 -1)

ds 2008-05-08 16:39 Rev.: 1126

check for time in nifti file, decide whether to divide dim(5) by 1000 or 1.
see also viewSet

15 lines of code changed in 1 file:

• mrLoadRet/Edit: editGroupGUI.m (+15 -1)

ds 2008-05-08 16:30 Rev.: 1125

added checking for xytz units in file. the default in the NIFTI file at NYU is ms, so dim(5) usually needs to be divided by 1000. this snippet of code checks that scaling factor. at nottingham, the default output is in s
xyzt_units (NYU) = 18,
xyzt_units (Nottingham) = 10

17 lines of code changed in 1 file:

• mrLoadRet/View: viewSet.m (+17 -1)

ds 2007-06-12 01:45 Rev.: 355

changed method for getting and setting field in struct from getfield syntax to dynamic version, which is preferable according to the matlab documentation.

7 lines of code changed in 2 files:

• mrUtilities/MatlabUtilities: mrGetFigLoc.m (+3 -2), mrSetFigLoc.m (+4 -1)

ds 2007-04-20 03:39 Rev.: 177

added a couple of lines to deal with different _segments_.

15 lines of code changed in 2 files:

• mrLoadRet/Analysis/EventRelated: eventRelated.m (+2 -1), eventRelatedGUI.m (+13 -1)