January 2010 Commit Log

Number of Commits:

15

Number of Active Developers:

3

justin 2010-01-28 13:45 #15 Rev.: 1631

Added validation of overlay

4 lines of code changed in 1 file:

• mrLoadRet/Analysis/QuickAnalysis: mrDispOverlay.m (+4 -1)

justin 2010-01-28 11:30 #14 Rev.: 1630

Not all voxels were showing up in searchForVoxel since sometimes you don't get an exact match (but you are within 1 voxel). So now there is a parameter to specifiy the radius you are willing to accept

18 lines of code changed in 1 file:

• mrLoadRet/Analysis: searchForVoxel.m (+18 -7)

justin 2010-01-28 11:29 #13 Rev.: 1629

Checking for bad filenames

5 lines of code changed in 1 file:

• mrLoadRet/File: importTSeries.m (+5)

eli 2010-01-26 02:05 #12 Rev.: 1628

I've been testing with Matlab7.9 and Mac OSX 10.6 and I believe everything is okay.

1 lines of code changed in 1 file:

• mrLoadRet: mrLoadRetVersion.m (+1 -1)

justin 2010-01-19 16:11 #11 Rev.: 1627

Check for whether a file has been processed or not added

7 lines of code changed in 1 file:

• mrUtilities/File/Varian: fid2xform.m (+7)

justin 2010-01-18 17:27 #10 Rev.: 1626

quietly deal with unprocessed epi files by setting voxel dimensions to nan

13 lines of code changed in 1 file:

• mrUtilities/File/Varian: fid2xform.m (+13 -5)

justin 2010-01-18 15:23 #9 Rev.: 1625

Fixing 3d pss slice order. There was a bit of confusion here. Before the code had:

procpar.pss = -procpar.pss
and had the rotation matrix basically undoing this.

But that isn't right. fid2nifti always orders slices from smallest to largest pss, so we don't have to reverse order in fid2xform. In fact, we should just assume that is the case so the offset to the first slice is always the min(pss). Which is what the code now does.

18 lines of code changed in 2 files:

• mrUtilities/File/Varian: fid2nifti.m (+3 -1), fid2xform.m (+15 -10)

tsliu 2010-01-15 23:55 #8 Rev.: 1624

fixed the group made if called with a different default group name (it was always making the 'Raw' group)

1 lines of code changed in 1 file:

• mrLoadRet/File: makeEmptyMLRDir.m (+1 -1)

justin 2010-01-14 21:35 #7 Rev.: 1623

For 3d scans, there was an erroneously line of code assuming that the 1st and 2nd dimensions were necessarily the same. Removed.

0 lines of code changed in 1 file:

• mrUtilities/File/Varian: fid2xform.m (-1)

justin 2010-01-07 21:30 #6 Rev.: 1622

cosmetic change of alignment menu to make "compute alignment" appear to be the default choice

0 lines of code changed in 2 files:

• mrAlign: mrAlignGUI.fig (changed), mrAlignGUI.m (-2)

justin 2010-01-07 20:17 #5 Rev.: 1621

Adding menu item for non-rigid body alignment

32 lines of code changed in 3 files:

• mrAlign: computeAlignment.m (+5 -2), mrAlignGUI.fig (changed), mrAlignGUI.m (+27)

justin 2010-01-07 17:46 #4 Rev.: 1620

Fix for linked checkbox

8 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: mrParamsDialog.m (+8 -2)

justin 2010-01-07 17:46 #3 Rev.: 1619

allow for hard links

3 lines of code changed in 1 file:

• mrUtilities/File/Nifti: copyNiftiFile.m (+3 -3)

justin 2010-01-07 17:46 #2 Rev.: 1618

Allow for hard links

14 lines of code changed in 1 file:

• mrUtilities/File: linkFile.m (+14 -4)

justin 2010-01-07 17:45 #1 Rev.: 1617

ALlowing for hard links

14 lines of code changed in 1 file:

• mrLoadRet/File: importGroupScans.m (+14 -2)

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