July 2009 Commit Log

Number of Commits:
27
Number of Active Developers:
1
justin 2009-07-28 23:23 Rev.: 1522

adding mrParamsEnable to enable/disable menu items in callback -- also adding ability to set fields as disabled on start up

46 lines of code changed in 2 files:

justin 2009-07-24 15:55 Rev.: 1521

description parameter was getting passed through when you were caling averageTSeries through the command line

5 lines of code changed in 1 file:

justin 2009-07-24 15:32 Rev.: 1520

Adding validation for mgl stimfiles

4 lines of code changed in 1 file:

justin 2009-07-23 10:41 Rev.: 1519

mrInit now validates filenames in the Raw/TSeries directory to make sure they are valid image headers

9 lines of code changed in 1 file:

justin 2009-07-23 10:40 Rev.: 1518

Adding mlrImage directory and the start of some functions that should serve as a wrapper around cbiReadNifti functions. THis will give us more flexibility in the future to be nifti independent -- for example, we can write read/write wrappers so that we aren't limited by the 16bit image width/height parameters, which is a problem for the surface images that.

Also, fixed cbiReadNiftiHeader so that it doesn't dump an error when it can't load a header, but returns gracefully with a warning and an empty header structure

173 lines of code changed in 5 files:

justin 2009-07-23 09:55 Rev.: 1516

This is just a test of branching and merging

1 lines of code changed in 1 file:

justin 2009-07-17 22:14 Rev.: 1513

Stuff to group arrays

42 lines of code changed in 2 files:

justin 2009-07-14 16:33 Rev.: 1512

Comments + fixing orientation

7 lines of code changed in 1 file:

justin 2009-07-14 16:31 Rev.: 1511

Export of an roi to a nifti file

54 lines of code changed in 1 file:

justin 2009-07-14 16:30 Rev.: 1510

Adding hook for export ROI

13 lines of code changed in 1 file:

justin 2009-07-11 22:59 Rev.: 1509

minor, removing debug print

0 lines of code changed in 1 file:

justin 2009-07-11 22:59 Rev.: 1508

catch error if mrLastView can't save -- this can be caused by bad permission settings, it should report something useful.

11 lines of code changed in 1 file:

justin 2009-07-11 22:48 Rev.: 1507

Function to turn on/off 3d rotating of surface volumes. This correctly adds a callback to set the rotate/tilt scroll bars after the user has finished free rotating. To hook this into the viewer code, we need to turn it on/off when a surface base is displayed -- and when mrInterrogator is set (i.e. should be turned off before running mrInterrogator).

71 lines of code changed in 1 file:

justin 2009-07-09 09:56 Rev.: 1506

Save anat as float32 instead of default -- otherwise if the data type was set uint8 for example, the surfaces were not saving with the full grayscale range

2 lines of code changed in 1 file:

justin 2009-07-08 10:53 Rev.: 1505

Put in warning for bad sliceIndex when displaying flats/surfaces -- this comes from a bad orientation of a qform -- and the error messages indicates how to debug the problem.

4 lines of code changed in 1 file:

justin 2009-07-07 21:29 Rev.: 1504

Adding output argument so that we can just get the header instead of directly creating the nifti file

11 lines of code changed in 1 file:

justin 2009-07-07 19:24 Rev.: 1503

Adding a quiet verbose setting

3 lines of code changed in 1 file:

justin 2009-07-06 23:49 Rev.: 1502

Adding TR calculation

15 lines of code changed in 1 file:

justin 2009-07-06 23:48 Rev.: 1501

Returning more fields in info structure

14 lines of code changed in 1 file:

justin 2009-07-06 22:30 Rev.: 1500

12 lines of code changed in 1 file:

justin 2009-07-06 14:48 Rev.: 1499


Commented out a restrictive piece of code which wasn't allowing overlays to be shown for some volumes. Basically, it was checking to make sure that a flat was being shown in the correct 3d orientation. It doesn't need to check for this, since this will never happen - but causes volumes that have strange qform/sfroms that don't point in the correct directions (but are otherwise ok) to mysteriously not show up. Removing this check should not cause any problems for existing surfaces / flat maps, but helps for sites that are debugging their qform/sform info.

2 lines of code changed in 1 file:

justin 2009-07-03 16:52 Rev.: 1498

Fixed small bug in how the xform for 3D volumes - instead of lr flip of the pss table it needed to be negated. THis wasn't caught before because the pss table was symmetric around 0...!

1 lines of code changed in 1 file:

justin 2009-07-03 16:46 Rev.: 1497

Added checks for correct extension and to check for file existence

15 lines of code changed in 2 files:

justin 2009-07-03 16:45 Rev.: 1496

added hook to call importTSeries

3 lines of code changed in 1 file:

justin 2009-07-03 16:45 Rev.: 1495

Small fix to keep from crashing when TR is read as too short

1 lines of code changed in 1 file:

justin 2009-07-03 16:44 Rev.: 1494

added function to importTseries

56 lines of code changed in 1 file:

justin 2009-07-03 16:44 Rev.: 1493

fixed to deal with sense images

18 lines of code changed in 1 file:

June 2009 »

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