January 2009 Commit Log

Number of Commits:
33
Number of Active Developers:
3
shani 2009-01-31 05:48 Rev.: 1383

Fixed a small bug we'd mistakenly introduced yesterday

22 lines of code changed in 1 file:

justin 2009-01-30 06:09 Rev.: 1382

Changing warning message for when a base volume does not have an associate .mat file with vol2mag and vol2tal fields.

10 lines of code changed in 1 file:

justin 2009-01-30 06:07 Rev.: 1381

Changing field talPoints to be named talInfo for consistency

12 lines of code changed in 1 file:

justin 2009-01-20 04:22 Rev.: 1380

minor changes to warning

3 lines of code changed in 1 file:

justin 2009-01-20 04:20 Rev.: 1379

minor fixes to get the viewNum and error message for non-existent viewGet

9 lines of code changed in 1 file:

justin 2009-01-20 04:19 Rev.: 1378

Check that the view variable is valid in the MLR global

6 lines of code changed in 1 file:

justin 2009-01-20 04:18 Rev.: 1377

Prints warning if you try and delete an already deleted view. Also clears the view variable that has been passed in in the calling space when it is deleted.

35 lines of code changed in 1 file:

justin 2009-01-20 04:17 Rev.: 1376

clean up to use viewGet/viewSet

88 lines of code changed in 1 file:

justin 2009-01-20 04:15 Rev.: 1375

ability to make a link rather than actually copy the new tSeries when passed in a filename. Also fileName was not generating the date correctly for some reason that appears to be a bug in the version of Matlab that I have. That is fixed.

9 lines of code changed in 1 file:

justin 2009-01-20 04:13 Rev.: 1374

display warning if no stimfiles found

7 lines of code changed in 1 file:

tsliu 2009-01-15 03:21 Rev.: 1373

Recompiled for 64bit Matlab beta.

0 lines of code changed in 1 file:

tsliu 2009-01-14 02:27 Rev.: 1372

made the function to take params so user can call it in script without the GUI.
Modified Files:
convertROICorticalDepth.m

64 lines of code changed in 1 file:

justin 2009-01-10 08:00 Rev.: 1371

fixing up importing stimfiles for concatenation

2 lines of code changed in 1 file:

justin 2009-01-10 07:59 Rev.: 1370

Fix to display parameters correctly on already computed analysis

11 lines of code changed in 1 file:

justin 2009-01-10 07:32 Rev.: 1369

stimfiles field can be a cell array. This is useful for imported concatenation files which have multiple stimfiles

6 lines of code changed in 1 file:

justin 2009-01-10 07:32 Rev.: 1368

Fixed copying of stimfiles when there are multiple stimfiles (like for a concatenation). Also default to linking rather than copying files.

7 lines of code changed in 1 file:

justin 2009-01-10 07:31 Rev.: 1367

Now copies associated .mat file as well (i.e. .mat file with same stem name)

10 lines of code changed in 1 file:

justin 2009-01-10 06:40 Rev.: 1366

Allow selection of scans to import, also fixing getting of multiple stimfiles - not finished yet though

11 lines of code changed in 1 file:

justin 2009-01-10 06:38 Rev.: 1365

Removed lingering keyboard

1 lines of code changed in 1 file:

justin 2009-01-10 06:37 Rev.: 1364

Added stop criteria for searching for comon paths when linking files

1 lines of code changed in 1 file:

justin 2009-01-09 07:37 Rev.: 1363

little fix to validate groups in MLR variable through isgroup when you add a new group

7 lines of code changed in 1 file:

justin 2009-01-09 07:17 Rev.: 1362

Gives option to link rather than copy files

6 lines of code changed in 1 file:

justin 2009-01-09 07:15 Rev.: 1361

Function that makes an empty MLR dir with a valid mrSession. This is useful if you want to make an empty group for copying other scans into

86 lines of code changed in 1 file:

justin 2009-01-09 07:12 Rev.: 1360

added a semi-colon

1 lines of code changed in 1 file:

justin 2009-01-09 07:12 Rev.: 1359

Fixes for using isgroup (which wasn't being used)

6 lines of code changed in 2 files:

justin 2009-01-09 07:11 Rev.: 1358

optional paramter to allow linking rather than copying

14 lines of code changed in 1 file:

justin 2009-01-09 07:11 Rev.: 1357

adding a function to link files in matlab. Works like copyfile. This may not work on other platforms (since it uses a system command: ln -s) This is used by copyNiftiFile and by importGroup to make links rather than copy whole time series

94 lines of code changed in 1 file:

justin 2009-01-09 01:45 Rev.: 1356

Using copy of scan used to read the whole time series into memory. But for large scans this was a problem. Now the copy/paste actually copies the nifti file instead of reading it into memory and writing it out again.Same deal for importGroupScans.

28 lines of code changed in 2 files:

justin 2009-01-09 01:44 Rev.: 1355

Using copy of scan used to read the whole time series into memory. But for large scans this was a problem. Now the copy/paste actually copies the nifti file instead of reading it into memory and writing it out again.

18 lines of code changed in 1 file:

justin 2009-01-08 08:03 Rev.: 1354

function to copy one nifti file to another location -- it handles the dual files correctly and checks for existence of files etc.

61 lines of code changed in 1 file:

justin 2009-01-07 06:51 Rev.: 1353

change to comments

7 lines of code changed in 1 file:

justin 2009-01-07 06:49 Rev.: 1352

Added functionality to support 1xn images where n is greater than a 16bit int width. This is useful for the surface curvature files that MLR saves. It now writes them out as a kx65535 image in which the description field holds the actualy width of the image (n). cbiRead/Write nifti can now read and write this out. Also, the old surface nifti files were based on a bit of a hack -- if the image width was 65535 it would just continue to load data, but there was no explicit setting as to what the width actually was. Those files still correctly open but the user gets an option to resave it in the new format (which is advised).

81 lines of code changed in 2 files:

justin 2009-01-07 06:45 Rev.: 1351

isfile also return file permissions as a second output

5 lines of code changed in 1 file:

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