May 2008 Commit Log

Number of Commits:
96
Number of Active Developers:
4
justin 2008-05-31 02:02 Rev.: 1174

The width of the fields was too large

1 lines of code changed in 1 file:

justin 2008-05-31 02:01 Rev.: 1173

minor change needed to keep the analysis from rerunning when viewing parameters

4 lines of code changed in 1 file:

justin 2008-05-31 02:00 Rev.: 1172

check for zero mean before adding back a 1

4 lines of code changed in 1 file:

justin 2008-05-29 05:47 Rev.: 1171

changes to handle default preferences

72 lines of code changed in 4 files:

justin 2008-05-29 05:46 Rev.: 1170

ability to clear the oneTimeWarning added

17 lines of code changed in 1 file:

justin 2008-05-29 05:46 Rev.: 1169

unnecessary call to viewSet sliceOrientation removed

0 lines of code changed in 1 file:

justin 2008-05-29 05:45 Rev.: 1168

some more changes to get sliceOrientation to work properly again (changes needed to be made since sliceOrientation needs to be changed when not running the GUI sometimes)

20 lines of code changed in 2 files:

justin 2008-05-29 04:16 Rev.: 1167

sliceOrientation viewSet existed in two places. also, removed flatSet, volumeSet and surfaceSet since they are legacy and were not being used

17 lines of code changed in 1 file:

justin 2008-05-29 00:26 Rev.: 1166

minor change

0 lines of code changed in 1 file:

justin 2008-05-29 00:25 Rev.: 1165

Program to set talairach points in a volume.

721 lines of code changed in 1 file:

justin 2008-05-29 00:17 Rev.: 1164

shortcut function to cd to the anatomy directory in mrSetPref

28 lines of code changed in 1 file:

justin 2008-05-28 06:48 Rev.: 1163

sliceOrientation can be a number or a string

14 lines of code changed in 1 file:

justin 2008-05-28 06:38 Rev.: 1162

sliceOrientation from view field rather than GUI

1 lines of code changed in 1 file:

justin 2008-05-28 03:33 Rev.: 1161

Changes to allow sliceOrientation be set without opening a figure (useful for scripting)

21 lines of code changed in 5 files:

justin 2008-05-28 03:29 Rev.: 1160

check for stimchannels

24 lines of code changed in 1 file:

justin 2008-05-28 03:28 Rev.: 1159

check for empty varnames instead of just crashing

3 lines of code changed in 1 file:

justin 2008-05-28 03:27 Rev.: 1158

check for valid passed in argument names

1 lines of code changed in 1 file:

justin 2008-05-28 03:26 Rev.: 1157

make sure to have a non-zero mean, otherwise the eventRelated code will divide by zero

5 lines of code changed in 1 file:

justin 2008-05-23 01:02 Rev.: 1156

minor added inmpotROIpath to list of known preferences

1 lines of code changed in 1 file:

justin 2008-05-21 02:24 Rev.: 1155

now does checking/fixing capitalization errors when using preferences

83 lines of code changed in 3 files:

justin 2008-05-21 02:23 Rev.: 1154

minor change: height of ui elements is adjusted according to matlab version

2 lines of code changed in 1 file:

justin 2008-05-21 02:22 Rev.: 1153

minor: changed print out of framePeriod when checking for time base in nifti header

1 lines of code changed in 1 file:

justin 2008-05-21 02:21 Rev.: 1152

minor change: resetting of dim should only happen if data is loaded

3 lines of code changed in 1 file:

justin 2008-05-20 21:17 Rev.: 1151

if no attached figure then don't display anything. This is useful for scripting in which you are just interested in the image that is returned

5 lines of code changed in 1 file:

justin 2008-05-20 21:16 Rev.: 1150

changes to make it so that viewSet is called when slices are changed

266 lines of code changed in 1 file:

justin 2008-05-20 21:16 Rev.: 1149

adding a curSlice to viewGet/viewSet, so that you can do this without having a figure showing (for scripting)

22 lines of code changed in 2 files:

justin 2008-05-20 21:14 Rev.: 1148

evalargs now has an argument which takes a list of valid variable names to check against

62 lines of code changed in 1 file:

justin 2008-05-20 03:18 Rev.: 1147

minor: usage comment

2 lines of code changed in 1 file:

justin 2008-05-16 01:48 Rev.: 1146

minor changes

3 lines of code changed in 2 files:

justin 2008-05-16 01:48 Rev.: 1145

Changes so that applyFiltering button does projection out as well as hipass filtering to the design matrix

41 lines of code changed in 4 files:

justin 2008-05-16 01:48 Rev.: 1144

keep projection vectors in concatInfo

4 lines of code changed in 1 file:

justin 2008-05-16 01:47 Rev.: 1143

Fixed a small bug that was occurring when you try to merge an old analysis which has some overlays that don't exist in the new analysis and some overlays that do. It was losing all the old overlay information.

12 lines of code changed in 1 file:

justin 2008-05-15 00:42 Rev.: 1142

minor organizational change. Moving into plot directory

112 lines of code changed in 4 files:

justin 2008-05-15 00:42 Rev.: 1141

minor organizational change: moving funcitons into Plot directory

0 lines of code changed in 4 files:

justin 2008-05-15 00:34 Rev.: 1140

helper function that sets all the yaxis of subplots to the same min and max

0 lines of code changed in 1 file:

justin 2008-05-15 00:33 Rev.: 1139

Two related interrogators. makeCorrelationMap can be used on an event-related analysis. When you click on a voxel (or roi) it does a projection analysis based on the event related analysis, and then saves the result in the d structure (in d.projectedOutEhdr) and creates an r overlay. This r-overlay gets the interrogator erCorrelationPlot, which plots the projectionEhdr, the voxels original ehdr and the projected out ehdr

147 lines of code changed in 2 files:

justin 2008-05-15 00:28 Rev.: 1138

if an eventRelated analysis is loaded, show the deconvolution results for the projetion vector etc.

114 lines of code changed in 1 file:

justin 2008-05-15 00:28 Rev.: 1137

more changes for making projection maps

14 lines of code changed in 1 file:

justin 2008-05-15 00:27 Rev.: 1136

minor fix: the dim field in the d structure needed to be updated with the actual dimensions of the scan (rather than the size of the block)

6 lines of code changed in 2 files:

justin 2008-05-15 00:25 Rev.: 1135

allow setting params field when installing overlay

5 lines of code changed in 1 file:

justin 2008-05-15 00:24 Rev.: 1134

when installing a new overlay, make sure to clear overlay cache of that overlay (important if we are overwriting an existing overlay)

2 lines of code changed in 1 file:

gbrouwer 2008-05-14 03:53 Rev.: 1133

The 4th dimension of the scan needed to be adjusted to account for junk frames

4 lines of code changed in 1 file:

justin 2008-05-10 04:46 Rev.: 1132

allow scripting of projectOutMeanVector

13 lines of code changed in 2 files:

justin 2008-05-09 07:12 Rev.: 1131

saving changes to all overlays with a button press

34 lines of code changed in 2 files:

justin 2008-05-09 05:29 Rev.: 1130

added flag for non-warning just print

13 lines of code changed in 1 file:

justin 2008-05-09 05:28 Rev.: 1129

minor: only display matlab/mlr version once per session to avoid getting this print out over-and-over again during automated analyses

3 lines of code changed in 3 files:

justin 2008-05-09 00:27 Rev.: 1128

getptsNoDoubleClick since for some machines double-click doesn't work properly

331 lines of code changed in 2 files:

justin 2008-05-09 00:26 Rev.: 1127

getptsNoDoubleClick support

8 lines of code changed in 1 file:

ds 2008-05-08 16:39 Rev.: 1126

check for time in nifti file, decide whether to divide dim(5) by 1000 or 1.
see also viewSet

15 lines of code changed in 1 file:

ds 2008-05-08 16:30 Rev.: 1125

added checking for xytz units in file. the default in the NIFTI file at NYU is ms, so dim(5) usually needs to be divided by 1000. this snippet of code checks that scaling factor. at nottingham, the default output is in s
xyzt_units (NYU) = 18,
xyzt_units (Nottingham) = 10

17 lines of code changed in 1 file:

justin 2008-05-07 09:49 Rev.: 1124

changes to allow calling with empty view

25 lines of code changed in 1 file:

justin 2008-05-07 00:08 Rev.: 1123

making sure to reset the current roi based on name after done (so it doesn't weirdly side-effect the viewer)

2 lines of code changed in 1 file:

justin 2008-05-07 00:07 Rev.: 1122

fix for pushing the buttons too frequently

18 lines of code changed in 1 file:

justin 2008-05-06 23:07 Rev.: 1121

minor: in roiNum if we have no ROIs loaded, small fix so it won't crash

6 lines of code changed in 1 file:

justin 2008-05-06 11:47 Rev.: 1120

figured out the normProjectionMagnitude was equivalent to Pearson's r so changed the code so that the overlay and variable name reflect this.

26 lines of code changed in 3 files:

justin 2008-05-06 11:45 Rev.: 1119

minor: report number of scans in group you are trying to delete with deletegroup

7 lines of code changed in 1 file:

justin 2008-05-06 11:41 Rev.: 1118

compute error bars for roi by averaging together the timecourses in the roi first and then using the regular event-related analysis error bar correction (assumption of uncorrelated noise).

159 lines of code changed in 2 files:

justin 2008-05-06 06:06 Rev.: 1117

make sure code runs w/out changing current roi--otherwise this will have funny side-effects on the GUI

4 lines of code changed in 1 file:

justin 2008-05-06 06:06 Rev.: 1116

fixed bug when reconciling analysis that left around too many overlays when you delete some

6 lines of code changed in 1 file:

eli 2008-05-06 01:14 Rev.: 1115

fixed small bug to allow for non-square matrices

1 lines of code changed in 1 file:

justin 2008-05-05 23:16 Rev.: 1114

minor: added separator in Analysis menu

0 lines of code changed in 1 file:

justin 2008-05-04 23:39 Rev.: 1113

curScan field

8 lines of code changed in 4 files:

justin 2008-05-04 23:38 Rev.: 1112

minor

1 lines of code changed in 1 file:

justin 2008-05-04 23:37 Rev.: 1111

use less memory

30 lines of code changed in 1 file:

justin 2008-05-04 14:34 Rev.: 1110

functions to handle projecting out a mean vector calculated from a source roi from a target roi

507 lines of code changed in 3 files:

justin 2008-05-04 14:25 Rev.: 1109

minor fix

5 lines of code changed in 1 file:

justin 2008-05-04 14:25 Rev.: 1108

Handles doing a concatenation with projectOut set correctly by saving an overlay for each scans projection

22 lines of code changed in 1 file:

justin 2008-05-04 14:24 Rev.: 1107

Allow you to save multiple overlays for a single scan

96 lines of code changed in 1 file:

justin 2008-05-04 14:23 Rev.: 1106

fixed an issue that happens if you have multiple overlays but some of the overlays are not computed for the current scan. In that case, you didn't get any overlay because the restricting based on the min/max settings was throwing out everything on the overlay that didn't exist

9 lines of code changed in 1 file:

justin 2008-05-04 14:22 Rev.: 1105

fix typo

1 lines of code changed in 1 file:

justin 2008-05-04 14:21 Rev.: 1104

minor changes

5 lines of code changed in 1 file:

justin 2008-05-04 08:02 Rev.: 1103

changes to accomodate projectOutMeanVector

11 lines of code changed in 2 files:

justin 2008-05-04 08:01 Rev.: 1102

minor: refresh when done so map shows up

3 lines of code changed in 1 file:

justin 2008-05-04 08:00 Rev.: 1101

minor: moved refresh after new analysis into the corAnal and eventRelated functions. Otherwise it refreshes everythime you switch groups

0 lines of code changed in 1 file:

justin 2008-05-03 12:11 Rev.: 1100

mrAlign does not need to store hdr in base structure

3 lines of code changed in 1 file:

justin 2008-05-03 12:10 Rev.: 1099

getting projectOutMeanVector to work

25 lines of code changed in 1 file:

justin 2008-05-03 12:09 Rev.: 1098

added setToMaxAroundZero for overlays colormaps that are symmetric around 0

9 lines of code changed in 1 file:

justin 2008-05-03 12:08 Rev.: 1097

small fix: handle roi name string

5 lines of code changed in 1 file:

justin 2008-05-03 12:08 Rev.: 1096

added scaleToMaxAroundZero

1 lines of code changed in 1 file:

justin 2008-05-03 07:22 Rev.: 1095

stuff for projection

88 lines of code changed in 1 file:

justin 2008-05-03 07:22 Rev.: 1094

minor check for hipass filter

1 lines of code changed in 1 file:

justin 2008-05-03 07:21 Rev.: 1093

Argument for demeaning as well as detrending

12 lines of code changed in 1 file:

justin 2008-05-03 07:21 Rev.: 1092

minor fix

3 lines of code changed in 1 file:

justin 2008-05-03 07:20 Rev.: 1091

For long timecourses put a button instead of trying to load timecourse from disk

38 lines of code changed in 1 file:

justin 2008-05-03 07:20 Rev.: 1090

minor: fix bad chars of overlayname

1 lines of code changed in 1 file:

justin 2008-05-03 07:19 Rev.: 1089

minor. check for valid view. change display string

5 lines of code changed in 1 file:

justin 2008-05-03 07:18 Rev.: 1088

default to curScan if no scan argument is passed in

4 lines of code changed in 1 file:

justin 2008-05-03 07:18 Rev.: 1087

display extra parameters even from command line

34 lines of code changed in 1 file:

justin 2008-05-03 07:17 Rev.: 1086

no interpreter in title

3 lines of code changed in 3 files:

justin 2008-05-03 07:17 Rev.: 1085

refresh the display when a new overlay is made

3 lines of code changed in 1 file:

justin 2008-05-03 07:16 Rev.: 1084

viewType is depreciated it doesn't need to be a required field

3 lines of code changed in 1 file:

justin 2008-05-03 07:15 Rev.: 1083

return empty if clip range is 0

5 lines of code changed in 1 file:

justin 2008-05-03 07:15 Rev.: 1082

keep order of passed in list

3 lines of code changed in 1 file:

eli 2008-05-03 04:35 Rev.: 1081

changed the way the motion comp parameters are displayed to accommodate the new motion comp params

7 lines of code changed in 1 file:

eli 2008-05-03 00:42 Rev.: 1080

fixed a small bug in which the current slice number in the mrLoadRet GUI is out of the range of EPI slices (e.g., this happened when you view a volume anatomy, and then call mrDispEpiMovie

2 lines of code changed in 1 file:

eli 2008-05-01 02:44 Rev.: 1079

set the xaxis on the rotation plot to be the correct number of frames

3 lines of code changed in 1 file:

April 2008 »

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