August 2007 Commit Log

Number of Commits:

63

Number of Active Developers:

5

eli 2007-08-30 04:48 #63 Rev.: 517

fixed viewGetting spikeinfo

6 lines of code changed in 1 file:

• mrLoadRet/View: viewGet.m (+6 -7)

shani 2007-08-28 05:21 #62 Rev.: 516

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6 lines of code changed in 1 file:

• mrLoadRet/File: mr3to4.m (+6 -4)

eli 2007-08-26 08:22 #61 Rev.: 515

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1 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: gethdr.m (+1)

eli 2007-08-26 08:22 #60 Rev.: 514

fixed small bug: only transpose hdr and hdrste when there is only one voxel AND only one condition.

2 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: gethdr.m (+2 -1)

shani 2007-08-25 04:09 #59

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10 lines of code changed in 2 files:

• mrLoadRet/Analysis: timeSeriesStats.m (+9 -8)

eli 2007-08-24 03:02 #58 Rev.: 511

process each slice separately to avoid memory problems for huge datasets
fixed bug with negative shift (now use circshift)

47 lines of code changed in 1 file:

• mrLoadRet/Analysis/AverageTSeries: averageTSeries.m (+47 -46)

justin 2007-08-24 00:42 #57 Rev.: 510

commented out unnecessary warning

2 lines of code changed in 1 file:

• mrLoadRet/View: isscan.m (+2 -2)

justin 2007-08-24 00:41 #56 Rev.: 509

minor change to help info

5 lines of code changed in 3 files:

• mrLoadRet/View: isscan.m (+2 -1), viewGet.m (+1 -1), viewSet.m (+2 -2)

justin 2007-08-24 00:41 #55 Rev.: 508

minor

1 lines of code changed in 1 file:

• mrLoadRet/GUI: refreshMLRDisplay.m (+1 -1)

justin 2007-08-24 00:40 #54 Rev.: 507

Removed line of code that was setting totalJunkedFrames to empty on starting mrLoadRet.
groupInfo displays totalJunkedFrames
scanInfo doesn't display path of stimfiles
loadFlat displays error string correctly when it doesn't recogonize the file format of the flat file.

7 lines of code changed in 4 files:

• mrLoadRet/File: groupInfo.m (+5 -2), loadFlat.m (+1 -1), loadSession.m (-1), scanInfo.m (+1 -1)

justin 2007-08-24 00:39 #53 Rev.: 506

minor changes

10 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: loadScan.m (+10 -2)

justin 2007-08-24 00:39 #52 Rev.: 505

some analyses did not have scanNums for a corresponding tseries filename which caused defaultReconcileParams to choke. I don't know why it gets into that state, but now if that happens it drops that scan from the analysis.

7 lines of code changed in 1 file:

• mrLoadRet/Analysis: defaultReconcileParams.m (+7)

eli 2007-08-21 04:55 #51 Rev.: 504

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1 lines of code changed in 1 file:

• mrLoadRet/Plot: mrEpiMovie.m (+1 -1)

eli 2007-08-21 04:54 #50 Rev.: 503

added circular looping

8 lines of code changed in 1 file:

• mrLoadRet/Plot: mrEpiMovie.m (+8 -10)

eli 2007-08-21 04:25 #49 Rev.: 502

initial upload

10 lines of code changed in 1 file:

• mrUtilities/ImageProcessing: mrUpSample.m (+10 -5)

eli 2007-08-21 04:20 #48 Rev.: 501

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66 lines of code changed in 1 file:

• mrUtilities/ImageProcessing: mrUpSample.m (new 66)

eli 2007-08-21 04:06 #47 Rev.: 500

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4 lines of code changed in 1 file:

• mrLoadRet/View: viewGet.m (+4 -2)

eli 2007-08-21 04:05 #46 Rev.: 499

added junk frames, and robust estimates (median/iqr)

31 lines of code changed in 1 file:

• mrLoadRet/Plot: mrSpikeDetector.m (+31 -11)

justin 2007-08-18 10:18 #45 Rev.: 498

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18 lines of code changed in 5 files:

• mrLoadRet/Analysis/EventRelated: eventRelatedPlot.m (+5 -3)
• mrLoadRet/GUI: mrLoadRetGUI.m (+1 -1), mrParamsDialogSelectScans.m (+3 -3)
• mrLoadRet/Plot: mrEpiMovie.m (+5), mrSpikeDetector.m (+4 -4)

justin 2007-08-18 09:41 #44 Rev.: 497

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13 lines of code changed in 2 files:

• mrLoadRet/Plot: mrSpikeDetector.m (+9 -5)
• mrUtilities/MatlabUtilities: mrParamsDialog.m (+4 -4)

justin 2007-08-18 09:24 #43 Rev.: 496

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1 lines of code changed in 1 file:

• mrLoadRet/Plot: mrSpikeDetector.m (+1 -1)

justin 2007-08-18 09:10 #42 Rev.: 495

modifications to add spike detector

434 lines of code changed in 6 files:

• mrLoadRet/Analysis/EventRelated: getr2.m (+1 -1)
• mrLoadRet/GUI: mrLoadRetGUI.m (+1 -1)
• mrLoadRet/Plot: mrSpikeDetector.m (new 384)
• mrLoadRet/View: viewGet.m (+16), viewSet.m (+7)
• mrUtilities/MatlabUtilities: mrParamsDialog.m (+25 -14)

justin 2007-08-18 09:06 #41 Rev.: 494

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82 lines of code changed in 3 files:

• mrLoadRet/GUI: mrLoadRetGUI.fig (changed), mrLoadRetGUI.m (+12 -1), mrParamsDialogSelectScans.m (new 70)

justin 2007-08-17 01:33 #40 Rev.: 493

save mrDefaults

1 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: mrSetFigLoc.m (+1)

justin 2007-08-17 01:33 #39 Rev.: 492

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1 lines of code changed in 1 file:

• mrLoadRet/Analysis: timeSeriesStats.m (+1)

justin 2007-08-17 01:23 #38 Rev.: 491

close callback mrStr2num handles filenames better

22 lines of code changed in 2 files:

• mrUtilities/MatlabUtilities: mrParamsDialog.m (+14 -3), mrStr2num.m (+8 -1)

justin 2007-08-17 01:22 #37 Rev.: 490

minor changes

17 lines of code changed in 1 file:

• mrLoadRet/Plot: mrEpiMovie.m (+17 -4)

justin 2007-08-17 01:22 #36 Rev.: 489

choose scans on timeSeriesStats

1 lines of code changed in 1 file:

• mrLoadRet/Analysis: timeSeriesStats.m (+1 -1)

justin 2007-08-17 01:14 #35 Rev.: 488

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4 lines of code changed in 1 file:

• mrLoadRet/Plot: mrEpiMovie.m (new 4)

justin 2007-08-17 01:11 #34 Rev.: 487

added epi movie

11 lines of code changed in 2 files:

• mrLoadRet/GUI: mrLoadRetGUI.fig (changed), mrLoadRetGUI.m (+11 -1)

justin 2007-08-16 22:19 #33 Rev.: 486

TR recalculation for 3d scans in eventRelated.m

30 lines of code changed in 3 files:

• mrAlign: mrAlignGUI.m (+1 -1)
• mrLoadRet/Analysis/EventRelated: loadScan.m (+7)
• mrLoadRet/View: viewGet.m (+22 -2)

justin 2007-08-14 00:47 #32 Rev.: 485

eventRelatedGUI was misspelled in the analysis sturcutre (eventRelateGUI) so that edit/analysis/edit analysis/set params did not work correctly. Also, added some stuff in eventRelatedGUI to just view set parameters

51 lines of code changed in 2 files:

• mrLoadRet/Analysis/EventRelated: eventRelated.m (+1 -1), eventRelatedGUI.m (+50)

justin 2007-08-14 00:01 #31 Rev.: 484

Made some changes in various files so that settings in the GUI don't keep getting reset. For example, if you switch base anatomies, the base anatomy remembers its slice number, rotation and sliceOrientation so that when you go back to it it goes back to the same slice. Also, updated the loadAnalyses feature so that when you change groups it keeps the loaded analyses so that they don't get unloaded everytime you go to a new group (this has now been updated to use viewSet/viewGet correctly. Also changing groups keeps which scan number you were on. Finally, the interrogator function name gets stored into the overlay when you change it by hand, so that it doesn't keep getting switched back

398 lines of code changed in 12 files:

• mrLoadRet/Analysis/EventRelated: getStimvol.m (+99 -88)
• mrLoadRet/Analysis/QuickAnalysis: mrDispOverlay.m (+6)
• mrLoadRet/File: loadROITSeries.m (+31 -7)
• mrLoadRet/GUI: mrInterrogator.m (+11 -7), mrLoadRetGUI.m (+10 -4), mrMoveWindow.m (+2 -2)
• mrLoadRet/View: isbase.m (+6 -6), isview.m (+4 -6), mrOpenWindow.m (+12), newView.m (+3), viewGet.m (+117 -6), viewSet.m (+97 -9)

justin 2007-08-09 06:59 #30 Rev.: 483

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34 lines of code changed in 2 files:

• mrLoadRet/GUI: mrLoadRetGUI.m (+3), mrMoveWindow.m (+31 -29)

justin 2007-08-09 06:45 #29 Rev.: 482

added comment

4 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: fixBadChars.m (+4 -2)

justin 2007-08-09 06:42 #28 Rev.: 481

better printing of "all parameters" help information with alphabetical listing

77 lines of code changed in 2 files:

• mrLoadRet/View: viewGet.m (+40 -3), viewSet.m (+37 -1)

justin 2007-08-09 01:36 #27 Rev.: 480

small changes.
getStimvol keeps a variable in d called eventRelatedVarname
groupInfo has a parameter to print out sform
saveAnalysis fixed small bug that was throwing out overlays from old analysis
mrLoadRetGUI/mrOpenWindow remember setting of showROIs
mrParamsDialog drawnow so that dialogs close right after getting clicked on

36 lines of code changed in 7 files:

• mrLoadRet/Analysis/EventRelated: getStimvol.m (+9)
• mrLoadRet/File: groupInfo.m (+13 -3), loadAnat.m (+3), saveAnalysis.m (+6)
• mrLoadRet/GUI: mrLoadRetGUI.m (+1)
• mrLoadRet/View: mrOpenWindow.m (+3)
• mrUtilities/MatlabUtilities: mrParamsDialog.m (+1 -1)

justin 2007-08-08 23:59 #26

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78 lines of code changed in 2 files:

• mrLoadRet/GUI: mrMoveWindow.m (+5 -3)

shani 2007-08-04 06:13 #25 Rev.: 477

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1 lines of code changed in 1 file:

• mrLoadRet/Analysis: defaultReconcileParams.m (+1 -1)

eli 2007-08-04 05:54 #24 Rev.: 476

fixed temporal smoothing parameter

11 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionComp.m (+11 -12)

eli 2007-08-04 05:54 #23 Rev.: 475

added temporal smoothing parameter

3 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionCompReconcileParams.m (+3)

eli 2007-08-04 05:53 #22 Rev.: 474

added more help

1 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionCompGUImrParams.m (+1 -3)

eli 2007-08-04 05:36 #21 Rev.: 473

added help, and smoothing param

17 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionCompGUImrParams.m (+17 -13)

eli 2007-08-04 05:07 #20 Rev.: 472

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3 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionComp.m (+3 -3)

eli 2007-08-04 04:59 #19 Rev.: 471

only apply transformation if baseXform and scanXform are different

65 lines of code changed in 1 file:

• mrLoadRet/Analysis/AverageTSeries: averageTSeries.m (+65 -54)

justin 2007-08-04 04:18 #18 Rev.: 470

GUI switched over to mrParamsDialog.m

180 lines of code changed in 2 files:

• mrLoadRet/Analysis/MotionComp: motionComp.m (+2 -1), motionCompGUImrParams.m (new 178)

justin 2007-08-04 02:52 #17 Rev.: 469

a variable called tseriesCrop which was holding a full time series "cropped" to not include junk frames was only being used to calculate a mean base volume. Removed this unnecessary variable to deal with memory issues

8 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionComp.m (+8 -6)

eli 2007-08-04 01:31 #16 Rev.: 468

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8 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionComp.m (+8 -4)

justin 2007-08-04 01:21 #15 Rev.: 467

fix for empty group

6 lines of code changed in 1 file:

• mrLoadRet/File: loadSession.m (+6 -4)

justin 2007-08-04 01:14 #14 Rev.: 466

minor fix

1 lines of code changed in 1 file:

• mrLoadRet/File: loadAnat.m (+1)

eli 2007-08-04 01:08 #13 Rev.: 465

added simple temporal smoothing option

155 lines of code changed in 1 file:

• mrLoadRet/Analysis/MotionComp: motionComp.m (+155 -138)

david 2007-08-03 22:36 #12 Rev.: 464

Modified Files:
mrLoadRetGUI.fig mrLoadRetGUI.m

Added menu for combineROIs

32 lines of code changed in 4 files:

• mrLoadRet/GUI: mrLoadRetGUI.fig (changed), mrLoadRetGUI.m (+16 -1)
• mrLoadRet/ROI: combineROIs.m (+13 -15), modifyROI.m (+3 -2)

david 2007-08-03 09:29 #11 Rev.: 463

Added Files:
combineROIs.m

New function for logical combination of ROIs (union, intersection, set difference)

83 lines of code changed in 1 file:

• mrLoadRet/ROI: combineROIs.m (new 83)

david 2007-08-03 09:29 #10 Rev.: 462

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311 lines of code changed in 3 files:

• mrLoadRet/ROI: newROI.m (+9 -2)
• mrUtilities/MatlabUtilities: mrParamsDialog.m (+253 -254), mrParamsParse.m (+49 -49)

shani 2007-08-03 06:54 #9 Rev.: 461

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43 lines of code changed in 3 files:

• mrLoadRet/Analysis: defaultReconcileParams.m (+15 -15), timeSeriesStats.m (+9 -9)
• mrLoadRet/View: viewSet.m (+19 -11)

justin 2007-08-03 04:55 #8 Rev.: 460

Changes to keep track of totalJunkedFrames

59 lines of code changed in 9 files:

• mrLoadRet/Analysis/ConcatTSeries: concatTSeries.m (+8 -2)
• mrLoadRet/Analysis/EventRelated: eventRelated.m (+1 -1), eventRelatedGUI.m (+1 -1), getStimvol.m (+1), loadScan.m (+1 -1)
• mrLoadRet/File: loadSession.m (+19), scanInfo.m (+4)
• mrLoadRet/View: isscan.m (+8 -8), viewGet.m (+16 -24)

shani 2007-08-03 00:27 #7 Rev.: 459

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2 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: eventRelatedPlot.m (+2 -2)

shani 2007-08-03 00:13 #6 Rev.: 458

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3 lines of code changed in 1 file:

• mrLoadRet/Analysis/ConcatTSeries: concatTSeries.m (+3 -1)

farshadm 2007-08-02 03:23 #5 Rev.: 457

added Link Stimfile to the Edit/Scan menu

28 lines of code changed in 2 files:

• mrLoadRet/GUI: mrLoadRetGUI.fig (changed), mrLoadRetGUI.m (+28 -2)

david 2007-08-01 05:24 #4 Rev.: 456

Modified Files:
motionComp.m motionCompGUI.fig motionCompGUI.m
motionCompReconcileParams.m motionCompWithinScan.m
sliceTimeCorrect.m

Added option for slice time correction to the middle or beginning of the TR, in addition to the end of the TR. Middle of the TR is the default.

104 lines of code changed in 7 files:

• mrLoadRet/Analysis/MotionComp: motionComp.m (+48 -20), motionCompGUI.fig (changed), motionCompGUI.m (+12 -1), motionCompReconcileParams.m (+2), motionCompWithinScan.m (+23 -6), sliceTimeCorrect.m (+18 -4)
• mrUtilities/ImageProcessing: warpAffineInterp3.m (+1 -3)

david 2007-08-01 05:23 #3 Rev.: 455

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21 lines of code changed in 1 file:

• mrLoadRet/Analysis/CorAnal: corAnalReconcileParams.m (+21 -21)

eli 2007-08-01 03:20 #2 Rev.: 454

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30 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: eventRelatedPlot.m (+30 -1)

david 2007-08-01 02:14 #1 Rev.: 453

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1 lines of code changed in 1 file:

• mrAlign: mrAlignGUI.m (+1 -1)

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