April 2007 Commit Log

Number of Commits:

66

Number of Active Developers:

3

justin 2007-04-30 23:43 #66 Rev.: 182

Check for no scans in group

16 lines of code changed in 3 files:

• mrLoadRet/Analysis/MotionComp: motionComp.m (+6), motionCompBetweenScans.m (+5), motionCompWithinScan.m (+5)

justin 2007-04-30 23:33 #65 Rev.: 181

mrInterrogator can be turned on/off and uses baseCoords

31 lines of code changed in 2 files:

• mrLoadRet/GUI: mrInterrogator.m (+15 -25), mrLoadRetGUI.m (+16 -2)

justin 2007-04-30 22:35 #64 Rev.: 180

Added menu item for/using current scan as a base anatomy

0 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.fig (changed)

justin 2007-04-24 00:14 #63 Rev.: 179

*** empty log message ***

64 lines of code changed in 10 files:

• mrAlign: refreshAlignDisplay.m (+2 -2)
• mrLoadRet/Analysis/ConcatTSeries: concatTSeries.m (+7 -2)
• mrLoadRet/Analysis/EventRelated: eventRelatedGUI.m (+9 -8)
• mrLoadRet/Analysis/QuickAnalysis: mrDispOverlay.m (+3)
• mrLoadRet/File: importGroupScans.m (+3), loadSession.m (+2 -1)
• mrLoadRet/GUI: mrInterrogator.m (+6), mrLoadRetGUI.m (+3 -2), refreshMLRDisplay.m (+18 -18)
• mrLoadRet/View: viewGet.m (+11 -4)

justin 2007-04-21 07:50 #62 Rev.: 178

*** empty log message ***

72 lines of code changed in 6 files:

• mrLoadRet/Analysis/EventRelated: eventRelated.m (-1)
• mrLoadRet/Analysis/QuickAnalysis: mrDispOverlay.m (+21 -9)
• mrLoadRet/File: saveAnalysis.m (+1 -1), saveROI.m (+2 -7)
• mrLoadRet/GUI: mrLoadRetGUI.m (+19 -15)
• mrUtilities/MatlabUtilities: fixBadChars.m (new 29)

ds 2007-04-20 03:39 #61 Rev.: 177

added a couple of lines to deal with different _segments_.

15 lines of code changed in 2 files:

• mrLoadRet/Analysis/EventRelated: eventRelated.m (+2 -1), eventRelatedGUI.m (+13 -1)

justin 2007-04-17 09:05 #60 Rev.: 176

small fixes here and there

49 lines of code changed in 6 files:

• mrLoadRet/Analysis/EventRelated: eventRelated.m (+2 -1)
• mrLoadRet/File: loadROITSeries.m (+1 -1), loadSession.m (+5), mr3to4.m (+12 -2), saveAnalysis.m (+23 -1)
• mrLoadRet/GUI: mrInterrogator.m (+6 -4)

eli 2007-04-14 05:15 #59 Rev.: 175

fixed spelling of alignment

1 lines of code changed in 1 file:

• mrLoadRet/File: mr4to3.m (+1 -1)

eli 2007-04-14 02:53 #58 Rev.: 174

added (commented) disppercent for profiling

24 lines of code changed in 1 file:

• mrLoadRet/GUI: refreshMLRDisplay.m (+24)

justin 2007-04-13 22:49 #57 Rev.: 173

added import goup scans into gui

8 lines of code changed in 2 files:

• mrLoadRet/GUI: mrLoadRetGUI.fig (changed), mrLoadRetGUI.m (+8 -1)

justin 2007-04-13 08:10 #56 Rev.: 172

coordinate transform stuff. MrInterrogator now does better with transforms but still is slightly fudging when you rotate (it can only handle 0,90,180 and 270).
importGroupScans was modified a lot to get it to work
and mr3to4 was fixed to make valid scanParams

112 lines of code changed in 7 files:

• mrLoadRet/File: importGroupScans.m (+8 -3), mr3to4.m (+27 -20)
• mrLoadRet/GUI: mrInterrogator.m (+40 -21), refreshMLRDisplay.m (+1 -1)
• mrLoadRet/View: isscan.m (+13), viewGet.m (+11 -2), viewSet.m (+12 -1)

justin 2007-04-13 08:09 #55 Rev.: 171

concatTSeries can now concat with scans from different sessions and warp the data together. required adding a swapxy before and after the transform that was already in the code

12 lines of code changed in 2 files:

• mrLoadRet/Analysis/ConcatTSeries: concatTSeries.m (+11 -5)
• mrLoadRet/Analysis/EventRelated: eventRelatedPlot.m (+1 -1)

justin 2007-04-13 08:07 #54 Rev.: 170

yes to all

10 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: askuser.m (+10 -4)

justin 2007-04-13 08:06 #53 Rev.: 169

ability to change qform/sform

93 lines of code changed in 2 files:

• mrUtilities/File/Nifti: mrFixNiftiHdr.m (+6 -1), mrSetNiftiTransforms.m (new 87)

justin 2007-04-13 00:37 #52 Rev.: 168

*** empty log message ***

37 lines of code changed in 5 files:

• mrLoadRet/Analysis/ConcatTSeries: concatTSeries.m (+7 -3)
• mrLoadRet/File: importGroupScans.m (+14 -4), mr3to4.m (+13 -4)
• mrLoadRet/GUI: mlrGuiSet.m (+1 -1)
• mrUtilities/MatlabUtilities: getLastDir.m (+2 -1)

justin 2007-04-12 23:23 #51 Rev.: 167

deleting multiple files was not working since as it deleted files that scan numbers changed--fixed it to delete by scan filename

17 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.m (+17 -2)

justin 2007-04-12 10:51 #50 Rev.: 166

*** empty log message ***

113 lines of code changed in 1 file:

• mrLoadRet/File: importGroupScans.m (new 113)

justin 2007-04-12 10:49 #49 Rev.: 165

various changes to aid in importing one group from another scan

145 lines of code changed in 13 files:

• mrLoadRet/Analysis/ConcatTSeries: concatTSeries.m (+6)
• mrLoadRet/Analysis/EventRelated: eventRelatedGUI.m (+3 -4), eventRelatedPlot.m (+29 -7), eventRelatedPreProcess.m (+7), getStimvol.m (+16 -5), gethdr.m (+7 -1)
• mrLoadRet/File: mr3to4.m (+20 -15)
• mrLoadRet/GUI: mrInterrogator.m (+2 -2), mrLoadRetGUI.m (+1 -1)
• mrLoadRet/ROI: importROI.m (+1 -5)
• mrLoadRet/View: viewGet.m (+1 -1), viewSet.m (+24 -4)
• mrUtilities/MatlabUtilities: cellArray.m (+28 -8)

justin 2007-04-11 23:31 #48 Rev.: 164

mrParamsDialog minor changes

82 lines of code changed in 4 files:

• mrLoadRet: mrGlobals.m (+8 -4)
• mrLoadRet/File: loadMrDefaults.m (+1 -1), saveMrDefaults.m (-1)
• mrLoadRet/GUI: mrParamsDialog.m (+73 -32)

eli 2007-04-10 04:03 #47 Rev.: 163

fixed importing MLR3 annotations

1 lines of code changed in 1 file:

• mrLoadRet/File: mr3to4.m (+1 -1)

justin 2007-04-07 05:45 #46 Rev.: 162

trying to fix QuickAnalysis

204 lines of code changed in 3 files:

• mrLoadRet/Analysis/QuickAnalysis: mrDispAsOverlay.m (new 32), mrDispOverlay.m (new 156), quickReconcile.m (new 16)

justin 2007-04-07 05:21 #45 Rev.: 158

trying to get new directory into repository

0 lines of code changed in 3 files:

• mrLoadRet/Analysis/QuickAnalysis: mrDispAsOverlay.m (del), mrDispOverlay.m (del), quickReconcile.m (del)

justin 2007-04-07 04:42 #44 Rev.: 157

plot peaks and fits if the field .peak is there

31 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: eventRelatedPlot.m (+31 -6)

justin 2007-04-06 07:25 #43 Rev.: 156

more bells and whistles

15 lines of code changed in 1 file:

• mrLoadRet/Analysis/QuickAnalysis: mrDispOverlay.m (+15 -6)

justin 2007-04-06 06:16 #42 Rev.: 154

quick analysis

195 lines of code changed in 3 files:

• mrLoadRet/Analysis/QuickAnalysis: mrDispAsOverlay.m (new 32), mrDispOverlay.m (new 147), quickReconcile.m (new 16)

justin 2007-04-06 06:16 #41 Rev.: 153

*** empty log message ***

18 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: getLastDir.m (new 18)

justin 2007-04-06 06:14 #40 Rev.: 152

convert a structure to a cell array

23 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: cellArray.m (new 23)

justin 2007-04-06 06:07 #39 Rev.: 151

*** empty log message ***

40 lines of code changed in 3 files:

• mrLoadRet/Analysis/ConcatTSeries: concatTSeries.m (+5)
• mrLoadRet/Analysis/EventRelated: eventRelated.m (+9 -5)
• mrLoadRet/GUI: mrParamsReconcile.m (+26)

justin 2007-04-06 05:01 #38 Rev.: 150

ability to merge/overwrite/ask when analysis bounce against old one

1 lines of code changed in 1 file:

• mrLoadRet/View: mrOpenWindow.m (+1 -1)

justin 2007-04-06 05:01 #37 Rev.: 149

ability to merge/overwrite/ask when analysis bounce against od one

76 lines of code changed in 6 files:

• mrLoadRet/GUI: closeGraphWin.m (+2), mlrGuiSet.m (+3 -2), mrLoadRetGUI.m (+15 -3), mrParamsDialog.m (+10 -4), mrParamsReconcile.m (+4 -1), refreshMLRDisplay.m (+42 -42)

justin 2007-04-06 05:01 #36 Rev.: 148

ability to merge/overwrite/ask when analysis bounce

77 lines of code changed in 1 file:

• mrLoadRet/File: saveAnalysis.m (+77 -4)

justin 2007-04-06 05:00 #35 Rev.: 147

cleaning up interface with MGL variables
matlab version 7.3

17 lines of code changed in 4 files:

• mrLoadRet/Analysis/EventRelated: eventRelated.m (+5 -5), eventRelatedGUI.m (-9), getStimvol.m (+8 -5), getr2.m (+4)

justin 2007-04-06 05:00 #34 Rev.: 146

matlab version 7.3

1 lines of code changed in 1 file:

• mrLoadRet: mrLoadRetVersion.m (+1 -1)

justin 2007-04-06 00:11 #33 Rev.: 145

A way to get default parameters from paramsInfo

46 lines of code changed in 1 file:

• mrLoadRet/GUI: mrParamsDefault.m (new 46)

justin 2007-04-06 00:11 #32 Rev.: 144

pulled out eventRelated gui

197 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: eventRelatedGUI.m (new 197)

justin 2007-04-06 00:10 #31 Rev.: 143

mrParams stuff does reconcile better

58 lines of code changed in 2 files:

• mrLoadRet/GUI: mrParamsDialog.m (+12 -2), mrParamsReconcile.m (+46 -46)

justin 2007-04-06 00:10 #30 Rev.: 142

event related analysis now returns hdr's that are reshaped

48 lines of code changed in 3 files:

• mrLoadRet/Analysis/EventRelated: eventRelated.m (+11 -121), gethdr.m (+3 -11), getr2.m (+34 -98)

justin 2007-04-05 07:50 #29 Rev.: 141

minor change

2 lines of code changed in 1 file:

• mrLoadRet/View: viewGet.m (+2 -2)

justin 2007-04-05 07:49 #28 Rev.: 140

eval args handles string arguments better

1 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: evalargs.m (+1 -1)

justin 2007-04-05 07:49 #27 Rev.: 139

minor changes

15 lines of code changed in 3 files:

• mrLoadRet/Analysis/CorAnal: corAnal.m (+11 -11)
• mrLoadRet/Analysis/EventRelated: eventRelated.m (+3 -1), eventRelatedPlot.m (+1 -1)

justin 2007-04-05 07:48 #26 Rev.: 138

returns view

3 lines of code changed in 1 file:

• mrLoadRet: mrLoadRet.m (+3 -2)

justin 2007-04-05 07:48 #25 Rev.: 137

scan info

92 lines of code changed in 2 files:

• mrLoadRet/File: saveAnalysis.m (+19 -19), scanInfo.m (new 73)

justin 2007-04-05 07:47 #24 Rev.: 136

small changes in info

6 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.m (+6 -6)

eli 2007-04-05 05:06 #23 Rev.: 135

commented out section confirming nFrames at end

4 lines of code changed in 1 file:

• mrLoadRet/File: loadTSeries.m (+4 -4)

justin 2007-04-05 01:17 #22 Rev.: 134

added stuf to display group/scan info

68 lines of code changed in 2 files:

• mrLoadRet/File: groupInfo.m (+2 -1)
• mrLoadRet/GUI: mrLoadRetGUI.m (+66 -1)

eli 2007-04-05 00:36 #21 Rev.: 133

fixed bug related to Nifti datatype and pixdim

13 lines of code changed in 1 file:

• mrUtilities/File: mrExport2SR.m (+13 -8)

eli 2007-04-05 00:33 #20

*** empty log message ***

2 lines of code changed in 2 files:

• mrLoadRet/GUI: mrLoadRetGUI.m (+1)

justin 2007-04-04 22:51 #19 Rev.: 130

added some new menu items for info

0 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.fig (changed)

justin 2007-04-04 07:25 #18 Rev.: 129

check for empty stimvol

2 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: eventRelated.m (+2 -1)

justin 2007-04-04 07:11 #17 Rev.: 128

Handle {{}} type varnames

8 lines of code changed in 2 files:

• mrLoadRet/Analysis/EventRelated: eventRelated.m (+7 -1), getStimvol.m (+1 -1)

justin 2007-04-04 00:17 #16 Rev.: 127

*** empty log message ***

2 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.m (+2 -2)

justin 2007-04-04 00:01 #15 Rev.: 126

Put back ROI coordinates menu item

9 lines of code changed in 2 files:

• mrLoadRet/GUI: mrLoadRetGUI.fig (changed), mrLoadRetGUI.m (+9 -1)

justin 2007-04-04 00:01 #14 Rev.: 125

mrLoadRet checks for mrSession and tells you if you don't have one

4 lines of code changed in 1 file:

• mrLoadRet: mrLoadRet.m (+4)

justin 2007-04-03 23:53 #13 Rev.: 124

added back with -kb flag

0 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.fig (new)

justin 2007-04-03 23:50 #12 Rev.: 123

delete this file so that we can put it back in as a binary

0 lines of code changed in 1 file:

• mrLoadRet/GUI: mrLoadRetGUI.fig (changed)

justin 2007-04-03 23:20 #11 Rev.: 122

added the ability to edit preferences from the gui
and load from the volume directory

112 lines of code changed in 10 files:

• mrLoadRet: mrGlobals.m (+10 -3)
• mrLoadRet/File: loadAnat.m (+20 -9), loadMrDefaults.m (+2 -1), saveMrDefaults.m (+11 -1), saveROI.m (-1)
• mrLoadRet/GUI: mrLoadRetGUI.fig (changed), mrLoadRetGUI.m (+54 -1)
• mrLoadRet/ROI: getRoiCoordinates.m (+3 -1)
• mrLoadRet/View: viewGet.m (+8), viewSet.m (+4)

justin 2007-04-03 23:19 #10 Rev.: 121

Little utility to put an item at the top of a list

25 lines of code changed in 1 file:

• mrUtilities/MatlabUtilities: putOnTopOfList.m (new 25)

eli 2007-04-03 11:20 #9 Rev.: 120

*** empty log message ***

14 lines of code changed in 2 files:

• mrLoadRet/GUI: mrLoadRetGUI.fig (changed), mrLoadRetGUI.m (+14 -2)

justin 2007-04-03 06:57 #8 Rev.: 119

cell array bug for task{1} vs task{1}{1} fixed

3 lines of code changed in 1 file:

• mrLoadRet/Analysis/EventRelated: eventRelated.m (+3 -1)

justin 2007-04-03 06:45 #7 Rev.: 118

pulled out getRoiCoordinates and added menu item to dump roi coordinates. also chaned editRoiGui to use mrParamsGui since it didn't work when running -nojvm.

124 lines of code changed in 7 files:

• mrLoadRet/Analysis/EventRelated: eventRelatedPlot.m (+1 -34)
• mrLoadRet/File: saveROI.m (+8)
• mrLoadRet/GUI: mrInterrogator.m (+1 -1), mrLoadRetGUI.fig (changed), mrLoadRetGUI.m (+43 -4)
• mrLoadRet/ROI: getRoiCoordinates.m (new 61), importROI.m (+10 -2)

justin 2007-04-03 02:53 #6 Rev.: 117

viewSet call was not saving header appropriately

1 lines of code changed in 1 file:

• mrUtilities/File/Nifti: mrFixNiftiHdr.m (+1 -1)

eli 2007-04-03 00:29 #5 Rev.: 116

updated to matlab version 7.4. seems to work on my intel mac running 7.4 (2007.04.02)

1 lines of code changed in 1 file:

• mrLoadRet: mrLoadRetVersion.m (+1 -1)

eli 2007-04-03 00:24 #4 Rev.: 115

refreshMLRDisplay now returns 'img', which is the overlaid image, useful for exporting.

1 lines of code changed in 1 file:

• mrLoadRet/GUI: refreshMLRDisplay.m (+1 -1)

eli 2007-04-02 23:26 #3 Rev.: 114

*** empty log message ***

35 lines of code changed in 1 file:

• mrLoadRet/File: reshapeTSeries.m (new 35)

eli 2007-04-02 23:25 #2 Rev.: 113

added reshapeTSeries function, since loadTSeries not longer reshapes when it loads

4 lines of code changed in 1 file:

• mrLoadRet/Analysis/CorAnal: corAnal.m (+4)

justin 2007-04-01 07:34 #1 Rev.: 112

Less chatty warning messages

8 lines of code changed in 2 files:

• mrUtilities/File/Nifti: cbiQuaternionToHomogeneous.m (+5 -5), cbiWriteNifti.m (+3 -3)

March 2007 »