January 2007 Commit Log

Number of Commits:

13

Number of Active Developers:

3

eli 2007-01-31 07:14 #13 Rev.: 17

*** empty log message ***

1 lines of code changed in 1 file:

• mrLoadRet/Analysis/ConcatTSeries: concatTSeries.m (+1 -1)

eli 2007-01-31 06:57 #12 Rev.: 16

added 'view = viewSet(view, 'groupName', groupName)' to selectScan routine -eli

1 lines of code changed in 1 file:

• mrLoadRet/Analysis/ConcatTSeries: concatTSeriesReconcileParams.m (+1)

david 2007-01-27 07:02 #11 Rev.: 15

*** empty log message ***

3 lines of code changed in 1 file:

• mrLoadRet: mrGlobals.m (+3 -3)

eli 2007-01-24 01:25 #10 Rev.: 14

*** empty log message ***

0 lines of code changed in 2 files:

• mrAlign: regHistogram.mexmaci (new)
• mrUtilities/ImageProcessing: myCinterp3.mexmaci (new)

david 2007-01-23 01:32 #9 Rev.: 13

Modified Files:
checkAlignment.m computeAlignment.m
intensityContrastCorrection.m interpVolume.m mrAlign.m
mrAlignGUI.m refreshAlignDisplay.m
use shiftOriginXform instead of ALIGN.origin to specify nifti origin
fix coarse alignment bug
----------------------------------------------------------------------
Modified Files:
mrGlobals.m mrLoadRetVersion.m
mrLoadRetVersion returns also expected matlab version, used for warning when starting mrLoadRet or mrAlign
----------------------------------------------------------------------
Modified Files:
averageTSeries.m
concatTSeries.m
use shiftOriginXform to specify nifti origin
----------------------------------------------------------------------
Modified Files:
mlrGuiSet.m mrLoadRetGUI.m refreshMLRDisplay.m
use shiftOriginXform to specify nifti origin
fix scan and slice sliders
----------------------------------------------------------------------
Modified Files:
xformROIcoords.m
use shiftOriginXform to specify nifti origin
----------------------------------------------------------------------
Modified Files:
viewGet.m
fix scan and slice sliders (round value in viewGet)
----------------------------------------------------------------------
Added Files:
shiftOriginXform.m
use shiftOriginXform to specify nifti origin
----------------------------------------------------------------------
Modified Files:
computeDerivatives3.m convXYZsep.m convXYsep.m
added shape ('full', 'same', or 'valid') parameter to all of these functions as in conv2, and set appropriate defaults.

40 lines of code changed in 3 files:

• mrUtilities/ImageProcessing: computeDerivatives3.m (+8 -8), convXYZsep.m (+20 -11), convXYsep.m (+12 -7)

david 2007-01-23 01:31 #8 Rev.: 12

Modified Files:
checkAlignment.m computeAlignment.m
intensityContrastCorrection.m interpVolume.m mrAlign.m
mrAlignGUI.m refreshAlignDisplay.m
use shiftOriginXform instead of ALIGN.origin to specify nifti origin
fix coarse alignment bug
----------------------------------------------------------------------
Modified Files:
mrGlobals.m mrLoadRetVersion.m
mrLoadRetVersion returns also expected matlab version, used for warning when starting mrLoadRet or mrAlign
----------------------------------------------------------------------
Modified Files:
averageTSeries.m
concatTSeries.m
use shiftOriginXform to specify nifti origin
----------------------------------------------------------------------
Modified Files:
mlrGuiSet.m mrLoadRetGUI.m refreshMLRDisplay.m
use shiftOriginXform to specify nifti origin
fix scan and slice sliders
----------------------------------------------------------------------
Modified Files:
xformROIcoords.m
use shiftOriginXform to specify nifti origin
----------------------------------------------------------------------
Modified Files:
viewGet.m
fix scan and slice sliders (round value in viewGet)
----------------------------------------------------------------------
Added Files:
shiftOriginXform.m
use shiftOriginXform to specify nifti origin
----------------------------------------------------------------------

21 lines of code changed in 2 files:

• mrLoadRet/View: shiftOriginXform.m (new 19), viewGet.m (+2 -2)

david 2007-01-23 01:30 #7 Rev.: 11

Modified Files:
checkAlignment.m computeAlignment.m
intensityContrastCorrection.m interpVolume.m mrAlign.m
mrAlignGUI.m refreshAlignDisplay.m
use shiftOriginXform instead of ALIGN.origin to specify nifti origin
fix coarse alignment bug
----------------------------------------------------------------------
Modified Files:
mrGlobals.m mrLoadRetVersion.m
mrLoadRetVersion returns also expected matlab version, used for warning when starting mrLoadRet or mrAlign
----------------------------------------------------------------------
Modified Files:
averageTSeries.m
concatTSeries.m
use shiftOriginXform to specify nifti origin
----------------------------------------------------------------------
Modified Files:
mlrGuiSet.m mrLoadRetGUI.m refreshMLRDisplay.m
use shiftOriginXform to specify nifti origin
fix scan and slice sliders
----------------------------------------------------------------------
Modified Files:
xformROIcoords.m
use shiftOriginXform to specify nifti origin

1 lines of code changed in 1 file:

• mrLoadRet/ROI: xformROIcoords.m (+1 -2)

david 2007-01-23 01:30 #6 Rev.: 10

Modified Files:
checkAlignment.m computeAlignment.m
intensityContrastCorrection.m interpVolume.m mrAlign.m
mrAlignGUI.m refreshAlignDisplay.m
use shiftOriginXform instead of ALIGN.origin to specify nifti origin
fix coarse alignment bug
----------------------------------------------------------------------
Modified Files:
mrGlobals.m mrLoadRetVersion.m
mrLoadRetVersion returns also expected matlab version, used for warning when starting mrLoadRet or mrAlign
----------------------------------------------------------------------
Modified Files:
averageTSeries.m
concatTSeries.m
use shiftOriginXform to specify nifti origin
----------------------------------------------------------------------
Modified Files:
mlrGuiSet.m mrLoadRetGUI.m refreshMLRDisplay.m
use shiftOriginXform to specify nifti origin
fix scan and slice sliders

21 lines of code changed in 3 files:

• mrLoadRet/GUI: mlrGuiSet.m (+16 -13), mrLoadRetGUI.m (+2 -2), refreshMLRDisplay.m (+3 -3)

david 2007-01-23 01:29 #5 Rev.: 9

Modified Files:
checkAlignment.m computeAlignment.m
intensityContrastCorrection.m interpVolume.m mrAlign.m
mrAlignGUI.m refreshAlignDisplay.m
use shiftOriginXform instead of ALIGN.origin to specify nifti origin
fix coarse alignment bug
----------------------------------------------------------------------
Modified Files:
mrGlobals.m mrLoadRetVersion.m
mrLoadRetVersion returns also expected matlab version, used for warning when starting mrLoadRet or mrAlign
----------------------------------------------------------------------
Modified Files:
averageTSeries.m
concatTSeries.m
use shiftOriginXform to specify nifti origin
----------------------------------------------------------------------

1 lines of code changed in 1 file:

• mrLoadRet/Analysis/ConcatTSeries: concatTSeries.m (+1 -3)

david 2007-01-23 01:29 #4 Rev.: 8

Modified Files:
checkAlignment.m computeAlignment.m
intensityContrastCorrection.m interpVolume.m mrAlign.m
mrAlignGUI.m refreshAlignDisplay.m
use shiftOriginXform instead of ALIGN.origin to specify nifti origin
fix coarse alignment bug
----------------------------------------------------------------------
Modified Files:
mrGlobals.m mrLoadRetVersion.m
mrLoadRetVersion returns also expected matlab version, used for warning when starting mrLoadRet or mrAlign
----------------------------------------------------------------------
averageTSeries.m
use shiftOriginXform to specify nifti origin

1 lines of code changed in 1 file:

• mrLoadRet/Analysis/AverageTSeries: averageTSeries.m (+1 -2)

david 2007-01-23 01:28 #3 Rev.: 7

Modified Files:
checkAlignment.m computeAlignment.m
intensityContrastCorrection.m interpVolume.m mrAlign.m
mrAlignGUI.m refreshAlignDisplay.m
----------------------------------------------------------------------
use shiftOriginXform instead of ALIGN.origin to specify nifti origin
fix coarse alignment bug
Modified Files:
mrGlobals.m mrLoadRetVersion.m
----------------------------------------------------------------------
mrLoadRetVersion returns also expected matlab version, used for warning when starting mrLoadRet or mrAlign

9 lines of code changed in 2 files:

• mrLoadRet: mrGlobals.m (+7 -4), mrLoadRetVersion.m (+2 -1)

david 2007-01-23 01:27 #2 Rev.: 6

Modified Files:
checkAlignment.m computeAlignment.m
intensityContrastCorrection.m interpVolume.m mrAlign.m
mrAlignGUI.m refreshAlignDisplay.m
----------------------------------------------------------------------
use shiftOriginXform instead of ALIGN.origin to specify nifti origin
fix coarse alignment bug

57 lines of code changed in 7 files:

• mrAlign: checkAlignment.m (+1 -1), computeAlignment.m (+7 -3), intensityContrastCorrection.m (+8 -4), interpVolume.m (+9 -10), mrAlign.m (+10 -2), mrAlignGUI.m (+13 -16), refreshAlignDisplay.m (+9 -10)

justin 2007-01-19 00:37 #1 Rev.: 2

Initial revision

21855 lines of code changed in 222 files:

• MLR4-tour.html (new), mrAlign.html (new)
• mrAlign: checkAlignment.m (new 77), checkAlignmentGUI.fig (new), checkAlignmentGUI.m (new 84), computeAlignment.m (new 100), errGaussRob.m (new 35), getGuiXform.m (new 58), hist2.m (new 74), intensityContrastCorrection.m (new 257), interpVolume.m (new 51), mrAlign.m (new 51), mrAlignGUI.fig (new), mrAlignGUI.m (new 878), mutualInformation.m (new 83), refreshAlignDisplay.m (new 162), regHistogram.c (new 114), regHistogram.dll (new 153), regHistogram.mex4 (new 9), regHistogram.mexglx (new 27), regHistogram.mexhp7 (new 16), regHistogram.mexlx (new 37), regHistogram.mexmac (new), setAlignGUI.m (new 40)
• mrLoadRet: foo2.txt (new), mrGlobals.m (new 40), mrLoadRet.m (new 20), mrLoadRetVersion.m (new 3)
• mrLoadRet/Analysis: dummyAnalysis.m (new 1), dummyAnalysisGUI.m (new 3), dummyAnalysisReconcileParams.m (new 3)
• mrLoadRet/Analysis/AverageTSeries: averageTSeries.m (new 226), averageTSeriesGUI.fig (new), averageTSeriesGUI.m (new 317), averageTSeriesReconcileParams.m (new 61)
• mrLoadRet/Analysis/ConcatTSeries: concatTSeries.m (new 225), concatTSeriesReconcileParams.m (new 36)
• mrLoadRet/Analysis/CorAnal: corAnal.m (new 312), corAnalGUI.fig (new), corAnalGUI.m (new 265), corAnalPlot.m (new 78), corAnalReconcileParams.m (new 59)
• mrLoadRet/Analysis/EventRelated: eventRelated.m (new 182), eventRelatedDetrend.m (new 49), eventRelatedGauss.m (new 49), eventRelatedHighpass.m (new 148), eventRelatedPlot.m (new 36), eventRelatedReconcileParams.m (new 34), getfirstvol.m (new 56), gethdr.m (new 24), getr2.m (new 168), getstimvol.m (new 403), makescm.m (new 101), stimconv.m (new 20)
• mrLoadRet/Analysis/MotionComp: dispmotioncorrect.m (new 79), motionComp.m (new 263), motionCompBetweenScans.m (new 208), motionCompGUI.fig (new), motionCompGUI.m (new 348), motionCompHackGUI.m (new 29), motionCompReconcileParams.m (new 68), motionCompWithinScan.m (new 193)
• mrLoadRet/Analysis/SignalProc: meanTSeries.m (new 45), percentTSeries.m (new 279), removeBaseline.m (new 48), tseriesROI.m (new 79)
• mrLoadRet/Edit: editAnalysisGUI.fig (new), editAnalysisGUI.m (new), editBaseGUI.fig (new), editBaseGUI.m (new 118), editGroupGUI.fig (new), editGroupGUI.m (new 261), editOverlayGUI.fig (new 38), editOverlayGUI.m (new 133), editRoiGUI.fig (new), editRoiGUI.m (new), editSessionGUI.fig (new), editSessionGUI.m (new 226)
• mrLoadRet/File: countNiftiFiles.m (new 23), groupInfo.m (new 83), loadAnalysis.m (new 79), loadAnat.m (new 103), loadOverlay.m (new 79), loadROI.m (new 84), loadSession.m (new 39), loadTSeries.m (new 86), mrCleanDir.m (new 89), niftiFileExtension.m (new 3), saveAnalysis.m (new 61), saveAnat.m (new 59), saveNewTSeries.m (new 44), saveOverlay.m (new 76), saveROI.m (new 65), saveSession.m (new 36), saveTSeries.m (new 93)
• mrLoadRet/GUI: buttondlg.m (new 2), closeGraphWin.m (new 20), mlrGuiSet.m (new 270), mrLoadRetGUI.fig (new), mrLoadRetGUI.m (new 1418), newGraphWin.m (new 15), refreshMLRDisplay.m (new 386), selectGraphWin.m (new 25), selectScans.m (new 40)
• mrLoadRet/Init: createReadme.m (new 130), mrInitRet.m (new 34)
• mrLoadRet/Plot: plotMeanFourierAmp.m (new 150), plotMeanOfMeanTSeries.m (new 72), plotMeanTSeries.m (new 56)
• mrLoadRet/ROI: drawROI.m (new 80), modifyROI.m (new 106), newROI.m (new 63), restrictROI.m (new 58), xformROIcoords.m (new 132)
• mrLoadRet/View: deleteView.m (new 32), isanalysis.m (new 26), isbase.m (new 25), isgroup.m (new 25), isoverlay.m (new 26), isroi.m (new 25), isscan.m (new 34), isview.m (new 39), mrOpenWindow.m (new 23), newView.m (new 52), viewGet.m (new 1866), viewSet.m (new 1128)
• mrUtilities/File/Dicom: readdicomheader.m (new 79)
• mrUtilities/File/Nifti: Contents.m (new 45), cbiCreateNiftiHeader.m (new 377), cbiHomogeneousToQuaternion.m (new 291), cbiMatlabDatatype2Nifti.m (new 42), cbiNiftiDatatype2Matlab.m (new 42), cbiQuaternionToHomogeneous.m (new 83), cbiReadNifti.m (new 233), cbiReadNiftiHeader.m (new 112), cbiSetNiftiQform.m (new 42), cbiSetNiftiSform.m (new 35), cbiSizeofNifti.m (new 46), cbiSwapNiftiDimensions.m (new 125), cbiWriteNifti.m (new 196), cbiWriteNiftiHeader.m (new 162), nifti1.h (new 1241)
• mrUtilities/ImageProcessing: binomialFilter.m (new 17), blur.m (new 36), blurDn.m (new 52), circularShift.m (new 33), clip.m (new 30), computeDerivatives2.m (new 22), computeDerivatives3.m (new 28), conv2sep.m (new 23), convXYZsep.m (new 73), convXYsep.m (new 29), convZ.m (new 36), corrDn.dll (new), corrDn.m (new 63), corrDn.mex4 (new), corrDn.mexglx (new), corrDn.mexhp7 (new), corrDn.mexlx (new), corrDn.mexmac (new), corrDn.mexsol (new), estMotion2.m (new 239), estMotion3.m (new 255), estMotionIter2.m (new 124), estMotionIter3.m (new 224), estMotionMulti2.m (new 231), estMotionMulti3.m (new 269), mse.m (new 8), myCinterp3.c (new 125), myCinterp3.cxx (new 128), myCinterp3.dll (new), myCinterp3.m (new 15), myCinterp3.mex4 (new), myCinterp3.mexa (new), myCinterp3.mexglx (new), myCinterp3.mexhp7 (new), myCinterp3.mexlx (new), myCinterp3.mexmac (new), myCinterp3.mexsol (new), namedFilter.m (new 71), putborde.m (new), quatR2mat.m (new 12), quatrot.m (new 15), reduce.m (new 38), robustMest.m (new 64), scale_im.m (new 31), selectCropRegion.m (new 116), upBlur.m (new 52), upConv.dll (new), upConv.m (new 80), upConv.mex4 (new), upConv.mexglx (new), upConv.mexhp7 (new), upConv.mexlx (new), upConv.mexmac (new), upConv.mexsol (new), upSample.m (new 46), upSampleRep.m (new 25), warpAffine2.m (new 58), warpAffine3.m (new 113)
• mrUtilities/MatlabUtilities: askuser.m (new 30), disppercent.m (new 106), first.m (new 13), getPathStrDialog.m (new 54), ieNotDefined.m (new 39), iseven.m (new 16), isfile.m (new 26), isodd.m (new 17), last.m (new 15), mrCloseDlg.m (new 16), mrDisp.c (new 60), mrDisp.mexmac (new), mrErrorDlg.m (new 24), mrMsgBox.m (new 34), mrWaitBar.m (new 64), mrWarnDlg.m (new 24), putPathStrDialog.m (new 43)
• mrUtilities/Plot: dsErrorsurface.m (new 146), getcolor.m (new 24), getedgecolor.m (new 35), xaxis.m (new 19), yaxis.m (new 18)