http://gru.brain.riken.jp/ 2010-03-13T04:33:10+09:00 http://gru.brain.riken.jp/ http://gru.brain.riken.jp/lib/images/favicon.ico text/html 2010-03-13T04:17:04+09:00 tsliu http://gru.brain.riken.jp/doku.php?id=mrtools:howto&rev=1268421424&do=diff Interrogate the overlay Under the Plots menu option in the GUI, choose 'Interrogate Overlay.' This will open a field in the lower left hand corner of the GUI that specifies which interrogator will run when you use your mouse to click on a voxel. The default interrogator is timecoursePlot. You can write your own code (it's useful to use eventRelatedPlot.m or timecoursePlot.m as a starting point) and type its name in the GUI field instead. Then your code will run when you click on a voxel. text/html 2010-03-05T16:54:54+09:00 sammokhtary http://gru.brain.riken.jp/doku.php?id=grupub:scanhistory&rev=1267775694&do=diff Scan ID Scan Type Notes Scaled? s00120090618 3D Anatomy HiRes 20jan10 s00220090622 3D Anatomy HiRes s00120090622 Pilot Retinotopy tested different tr, different te times s00120090706 Full Retinotopy used optimal te = t2* 01feb10, redo. not good dataset. makes dataset worse if averaged with s00120091009. s00120090805 Pilot Retinotopy tested longer te times s00320090809 Full Retinotopy for Andy s00420090825 Full Retinotopy for Andy s00520090825 Full Retino… text/html 2010-03-03T21:41:38+09:00 justin http://gru.brain.riken.jp/doku.php?id=mrtools:tutorialsretinotopy&rev=1267620098&do=diff This tutorial shows you how to run a retinotopy analysis with mrLoadRet. It is a good place to start if you are just learning how to use mrLoadRet. Overview * Download the tutorial files * The stimuli used in the experiment * Make the directory structure for mrLoadRet and move the files into the correct locations * Run mrInit to initialize the session * Run the Motion Compensation * Average wedge and ring scans together * Run the correlation analysis * Use mrAlign to align the … text/html 2010-02-26T20:14:35+09:00 brett http://gru.brain.riken.jp/doku.php?id=grupub:dofmrigru&rev=1267182875&do=diff Before you run dofmrigru at all... Informed Consent forms At the end of your experiment, make a copy of the scan log, RRC consent form, and RRC questionnaire. The RRC needs these documents filed in their respective folders downstairs with the magnet. The copies are for GRU to keep.